I'm going to do this from memory...I thought I had my original instructions, but I can't find them.
1) Remove the factory bolt that goes through the rear rack...right at the end of the black plastic piece.
2) Center the chrome rack thing that looks like a big cheese grater on top of the original rack and use one of the bolts to screw it right down through that same bolt hole.
If the bolts you have aren't long enough, just take them to a hardware store and get a longer one...I think I may have had to do that myself.
I also used a large washer, too. See the pic below.
BTW, I almost never remove the topcase so it got a bit grungy there...can't see it with the case on though. Four years now. Those ugly little red rubber washers help keep the rattle down. Yours may not rattle...like I said, my case has been riding there for quite a while.
Hope this helps.