So,
I got off the phone yesterday with the county Traffic Signal Operations Zone Engineer as we were going over signal timing and pedestrian priorities, and we briefly touched upon motorcycle/scooter usage.
Here is what he explained regarding the inductive loops that are in the pavement:
Motorcycles/scooters need to sit on/over the loop line in the ground, not pass over it into the box to trigger the light.
If you are not vertically above the line in the ground, the signal will think the 'car' has left and not start the clock to countdown to change the light.
Seth